izv. prof. dr. sc. Janko Diminić
Laboratorij za bioinformatiku
Radno mjesto:
izvanredni profesor
Zavod / Katedra:
Laboratorij za bioinformatiku
Godina diplomiranja:
2005.
Godina doktoriranja:
2013.
Na sveučilištu od:
2015.
Telefon:
4605-000
Interni telefon:
1025
E-mail:
E-mail
Nastava
Prijediplomski
- Digitalna biotehnologija (252782) — Vježbe u praktikumu
- Osnove informatike (24091) — Vježbe u praktikumu
- Osnove informatike (24116) — Vježbe u praktikumu
- Osnove informatike (37961) — Vježbe u praktikumu
- Osnove informatike (239331) — Vježbe u praktikumu
- Osnove informatike (239470) — Vježbe u praktikumu
- Osnove informatike (240347) — Vježbe u praktikumu
Diplomski
- Programiranje u bioinformatici (53272) — Nositelj, Seminar, Vježbe u praktikumu
- Industrija 4.0 u biotehničkim znanostima (253087) — Predavanja, Seminar
- Uvod u diplomski rad (66880) — Seminar
- Uvod u diplomski rad (66882) — Seminar
- Diplomski rad (66875) — Laboratorijske vježbe
- Diplomski rad (66881) — Laboratorijske vježbe
Znanstvene publikacije
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Extraction strategies integrated with digitalization processes for the characterization of proteins from broad bean and red beetroot waste leaves
Ultrasonics sonochemistry, 128 (2026) str. 1-13, doi: 10.1016/j.ultsonch.2026.107820
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Digitalisation, bioinformatics, and delivery systems in sustainable nonthermal extraction of proteins
International journal of food science & technology, 60 (2025) vvae038, 24, doi: 10.1093/ijfood/vvae038
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Bioprospecting for Microorganisms in Peloids—Extreme Environment Known for Its Healing Properties
Frontiers in marine science, 9 (2022) 822139, 12, doi: 10.3389/fmars.2022.822139
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Proteomics and Foodborne Pathogens
Comprehensive Foodomics,Elsevier, (2021) str. 137-148, doi: 10.1016/B978-0-08-100596-5.22842-4
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Probiotic – friend or foe?
Current opinion in food science, 32 (2020) str. 45-49, doi: 10.1016/j.cofs.2020.01.007
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Identification of Escherichia coli, Klebsiella pneumoniae and Mycoplasma spp. directly from urine samples
Abstract Book of 17th Austrian Proteomics and Metabolomics Research Symposium,Verlags und Herstellungsort, (2019) str. 87-87
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Microbiota: Novel Gateway Towards Personalised Medicine
Personalized Medicine in Healthcare Systems,Springer, (2019) str. 107-120, doi: 10.1007/978-3-030-16465-2_9
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Fibre intake as a tool for manipulating gut microbiota ina n obese individual
Proceedings of the 10th International Scientific and Professional Conference WITH FOOD TO HEALTH, (2018) str. 65-74
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Bioprospecting for Genes Encoding Hydrocarbon-Degrading Enzymes from Metagenomic Samples Isolated from Northern Adriatic Sea Sediments
Food technology and biotechnology, 56 (2018) str. 270-277, doi: 10.17113/ftb.56.02.18.5393
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Accurate identification of microorganisms by de novo sequencing
8th Regional Biophysics Conference : Book of Abstracts,Slovenian Biophysical Society, (2018) str. 89-89
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Rapid identification of microorganisms by protein reading concept using CAF-/CAF+ reagent
Proceedings of the 11th Central and Eastern European Proteomic Conference, (2017) str. 61-61
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Benefits of selective peptide derivatization with sulfonating reagent at acidic pH for facile matrix- assisted laser desorption/ionization de novo sequencing
RCM. Rapid communications in mass spectrometry, 30 (2016) str. 1687-1694, doi: 10.1002/rcm.7594
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Dynamics of urinary microbiota following antibiotic therapy
(2016)
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Bacterial diversity of polluted surface sediments in northern Adriatic Sea determined by pyrosequencing
Systematic and applied microbiology, 38 (2015) str. 189-197, doi: 10.1016/j.syapm.2015.03.001
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In silico karakterizacija metagenomskih alkan 1-monooksigenaza
(2015)
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BIOINFORMATICS ANALYSIS OF ALKANE 1-MONOOXYGENASES DISCOVERED IN METAGENOMIC SAMPLES OF SEDIMENT FROM THE ADRIATIC SEA
(2015)
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OPTIMIZATION AND COMPARISON OF ALGORITHMS FOR THE ALIGNING OF SHORT PROTEIN SEQUENCES
(2015)
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A novel computational approach applicable to human microbiome studies – urinary tract microbiome example
The 2nd Microbiome R and D and Business Collaboration Forum : Europe : abstracts, (2015) str. 1-1
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Mass Spectrometry, clinical proteomics and bioinformatics as microbial crime fighters
(2014)
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Nutrigenomička analiza metaboličkih putova u kvascu Saccharomyces cerevisiae iščitavanjem reverzne translacije uz pomoć de novo sekvenciranja peptida
(2014)
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Evolutionary concepts in natural products discovery: what actinomycetes have taught us
Journal of industrial microbiology & biotechnology, 41 (2014) str. 211-217
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Predicting substrate specificity of adenylation domains of nonribosomal peptide synthetases and other protein properties by latent semantic indexing
Journal of industrial microbiology & biotechnology, 41 (2014) str. 461-467
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Metagenome mining for genes involved in alkane degradation
(2014)
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KEGG orthology-based annotation of the predicted proteome of Acropora digitifera: ZoophyteBase - an open access and searchable database of a coral genome
Bmc genomics, 14 (2013) str. 509-509, doi: 10.1186/1471-2164-14-509
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Databases of the Thiotemplate Modular Systems (CSDB) and their in silico recombinants (r-CSDB)
Journal of industrial microbiology & biotechnology, 40 (2013) str. 653-659, doi: 10.1007/s10295-013-1252-z
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KEGG orthology-based annotation of the predicted proteome of Acropora digitifera: ZoophyteBase - an open access and searchable database
Bmc genomics, 14 (2013) , doi: 10.1186/1471-2164-14-509
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Synthetic Biology : A novel approach for the construction of industrial microorganisms
Food technology and biotechnology, 51 (2013) str. 3-11
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Evolutionary concepts in natural products discovery - what actinomycetes have taught us
Journal of industrial microbiology & biotechnology, 41 (2013) str. 211-217, doi: 10.1007/s10295-013-1337-8
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Browsing metagenomes for novel starch and carbohydrate industry enzymes - AMYLOMICS case study
CURRENT OPINION IN BIOTECHNOLOGY Volume: 24 Supplement: 1,Current opinion in biotechnology, Elsevier, (2013) str. S21-S21
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Prediction of the substrate specificity of adenylation domains of non-ribosomal peptide synthetases and other protein properties by latent semantic indexing
Journal of industrial microbiology & biotechnology, 41 (2013) str. 461-467, doi: 10.1007/s10295-013-1322-2
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The effect of starvation stress on Lactobacillus brevis L62 protein profile determined by de novo sequencing in positive and negative mass spectrometry ion mode
RCM. Rapid communications in mass spectrometry, 27 (2013) str. 1045-1054, doi: 10.1002/rcm.6528
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Recombinatorial biosynthesis of polyketides
Journal of industrial microbiology & biotechnology, 39 (2012) str. 503-511, doi: 10.1007/s10295-011-1049-x
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Microbial genome browsing
Book of Abstracts,Hrvatsko mikrobiološko društvo, (2012) str. 21-21
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Amyloenzymes captured by targeted Metagenomics
CBM9 conference, (2011)
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Nutrigenomics and individual human genomes
Book of Abstracts,Hrvatsko društvo prehrambenih tehnologa, biotehnologa i nutricionista, (2011) str. 51-51
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A novel docking domain interface model that can predict recombination between homoeologous modular biosynthetic gene clusters
Journal of industrial microbiology & biotechnology, 38 (2011) str. 1295-1304, doi: 10.1007/s10295-010-0909-0
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Genomic data analysis - "What Would Google Do?
CIPKEBIP Annual Conference 2011 Program "Biosynthetic and metabolic engineering in industrial drug and process development",Centre of Excellence for Integrated Approaches in Chemistry and Biology of Protein, (2011) str. 11-11
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Towards novel modular polyketide synthases – lessons learnt from evolution
CIPKEBIP Annual Conference 2011 Program "Biosynthetic and metabolic engineering in industrial drug and process development",Centre of Excellence for Integrated Approaches in Chemistry and Biology of Protein, (2011) str. 9-9
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Diet and genes – assessments of Diabetes mellitus type 2 biological networks
(2011)
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An expert system for in silico drug design and discovery
Book of Abstracts,Hrvatsko društvo prehrambenih tehnologa, biotehnologa i nutricionista, (2011) str. 29-29
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Modelling of homologous recombination in modular polyketide synthases combined with synthetic biology as a strategy for producing biologically active lead compounds
Abstracts,European Science Foundation I Research Conferences Unit, (2011) str. 63-63
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ClustScan : an integrated program package for the detection and semi-automatic annotation of secondary metabolite clusters in genomic and metagenomic DNA data sets
Handbook of Molecular Microbial Ecology, Volume I: Metagenomics and Complementary Approaches,John Wiley & Sons, (2011) str. 423-432
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3DIS : An expert system for in silico drug design and discovery
Proceedings of the 7th International Congress of Food Technologists, Biotechnologists and Nutritionists,Hrvatsko društvo prehrambenih tehnologa, biotehnologa i nutricionista, (2011) str. 10-15
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From DNA Sequences to Chemical Structures – Methods for Mining Microbial Genomic and Metagenomic Datasets for New Natural Products
Food technology and biotechnology, 48 (2010) str. 234-242